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ERX1483954: PacBio RS sequencing
1 PACBIO_SMRT (PacBio RS) run: 163,482 spots, 2.4G bases, 7.6Gb downloads

Submitted by: King Abdullah University of Science and Technology
Study: We report the complete genome sequences of P. knowlesi strains culture-adapted to growth in human and cynomolgus erythrocytes, and a comprehensive catalogue of the genetic variation between these parasites
show Abstracthide Abstract
Plasmodium knowlesi is a malaria parasite commonly found in macaques, and the causative agent of severe zoonotic disease in South East Asia. Whilst P. knowlesi can be readily adapted to in vitro culture with macaque red blood cells (RBC), extended adaptation and improved invasion efficiency are required to maintain the parasite in human RBC. In all malaria parasite species, two families of adhesins, the reticulocyte binding like/reticulocyte binding homologue (RBL/RH) protein and Duffy binding protein/erythrocyte binding antigen (DBP/EBA) are secreted onto the merozoite surface and bind to specific host cell receptors to facilitate RBC invasion. These proteins are important determinants of parasite virulence and host cell tropism, and are potential vaccine candidates. Here we provide the first de novo genome assembly of a human-adapted parasite, representing an important P. knowlesi reference line, and compare it with similar cynomolgus-adapted lines. Comparison of the genome sequences of three parasite lines generated during adaptation, highlight a role for an RBL protein called normocyte binding protein Xa (NBPXa) in human RBC invasion. By generating a parasite line with the NBPXa gene disrupted we show that this protein is required for invasion of human but not macaque RBC. This finding has clear implications for understanding disease severity and the potential for human to human transmission. It provides a robust experimental platform to unravel conserved malaria parasite invasion mechanisms, and in particular provides the basis for intervention strategies to control P. knowlesi and related parasites such as the major human pathogen Plasmodium vivax.
Sample: PKNA1-C.2
SAMEA3468080 • ERS763677 • All experiments • All runs
Library:
Name: PKNA1-C.2 PacBio Run 1
Instrument: PacBio RS
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: SINGLE
Runs: 1 run, 163,482 spots, 2.4G bases, 7.6Gb
Run# of Spots# of BasesSizePublished
ERR1413164163,4822.4G7.6Gb2016-07-01

ID:
2739266

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